Why is EcoRI a good restriction enzyme?

Restriction enzymes are used in a wide variety of molecular genetics techniques including cloning, DNA screening and deleting sections of DNA in vitro. Restriction enzymes, like EcoRI, that generate sticky ends of DNA are often used to cut DNA prior to ligation, as sticky ends make the ligation reaction more efficient.

What is the sequence of EcoRI?

EcoRI recognizes the sequence GAATTC, and cuts both DNA strands between the G and the A nucleotides. Protruding from the cut ends will be single-stranded DNA “tails” having the sequences AATT.

Is EcoRI methylation sensitive?

Although the EcoRI enzyme recognizing GAATTC is used as an enzyme that is not sensitive to methylation in MSAP, EcoRI did not digest GAATTmC sequences when cytosines at both strands are methylated [34,35].

What is EcoRI used for?

EcoRI or a similar restriction enzyme is used to cut the gene of interest from the organism. The same restriction enzyme is used to open a bacterial plasmid up for gene insertion. The gene of interest is inserted into the bacterial plasmid via an enzyme called DNA ligase.

What is a Type 2 restriction enzyme?

Type II restriction enzymes are the familiar ones used for everyday molecular biology applications such as gene cloning and DNA fragmentation and analysis. These enzymes cleave DNA at fixed positions with respect to their recognition sequence, creating reproducible fragments and distinct gel electrophoresis patterns.

What is EcoRI and HindIII?

Description. Thermo Scientific Lambda DNA/EcoRI+HindIII Marker is recommended for sizing of linear double-stranded large DNA fragments in agarose gels. Lambda DNA is digested to completion with the appropriate Thermo Scientific restriction enzyme(s) and purified and dissolved in storage buffer.

Does EcoRI cut the following sequence?

EcoRI cuts double stranded DNA at the sequence GAATTC, but note that this enzyme, like many others, does not cut in exactly the middle of the restriction sequence (Figure 8.4. 8). The ends of a molecule cut by EcoRI have an overhanging region of single stranded DNA, and so are sometimes called sticky-ends.

Is BamHI a DNA?

This allows the DNA to maintain its normal B-DNA conformation without distorting to facilitate enzyme binding. BamHI is a symmetric dimer. DNA is bound in a large cleft that is formed between dimers; the enzyme binds in a “crossover” manner….

Symbol BamHI
Pfam PF02923
Pfam clan CL0236
InterPro IPR004194

What do eco R and I refer to in the enzyme EcoRI?

In EcoRI, Eco represents the species of bacteria from which it is isolated i.e. Escherichia coli. R represents the strain of the bacteria which is RY-13 in this case. I represent that it was the first enzyme isolated from this strain.

What are the 3 types of restriction enzymes?

Today, scientists recognize three categories of restriction enzymes: type I, which recognize specific DNA sequences but make their cut at seemingly random sites that can be as far as 1,000 base pairs away from the recognition site; type II, which recognize and cut directly within the recognition site; and type III.

What is the difference between Type 1 and Type 2 restriction enzymes?

Type I restriction enzyme possesses a cleaving site which is away from the recognition site. Type II restriction enzymes cleave within the recognition site itself or at a closer distance to it. This is the key difference between Type I and Type II restriction enzyme.

What can EcoRI restriction enzyme be used for?

DNA Restriction Enzymes from Takara such as EcoRI are high-quality: perform restriction enzyme digestion with reliable restriction endonucleases. Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind.

Which is the best restriction enzyme from Takara?

DNA Restriction Enzymes from Takara such as EcoRI are high-quality: perform restriction enzyme digestion with reliable restriction endonucleases. Cat. # 1040B contains 5 of Cat. # 1040A.

How to select restriction enzymes for plasmid digestion?

Select restriction enzymes to digest your plasmid. *Pro-Tip* To determine which restriction enzymes will cut your DNA sequence (and where they will cut), use a sequence analysis program such as Addgene’s Sequence Analyzer. Determine an appropriate reaction buffer by reading the instructions for your enzyme.

How is restriction digestion used in molecular biology?

Restriction enzyme digestion is commonly used in molecular cloning techniques, such as PCR or restriction cloning. It is also used to quickly check the identity of a plasmid by diagnostic digest. Last Upload: Oct. 11th, 2016